PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g08300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family AP2
Protein Properties Length: 410aa    MW: 46836.3 Da    PI: 8.4573
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g08300.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.51.1e-20166216255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrdp++ng  +r++lg+f+t+e+Aa a+++a+ k++g
  Vradi04g08300.1 166 HYRGVRRRP-WGKFAAEIRDPKKNG--TRVWLGTFDTEEKAALAYDKAAFKMRG 216
                      8********.***********9998..*************************98 PP

2AP261.22.4e-19312362255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrdp++ng  +r++lg++ t+eeAa a+++a+ k++g
  Vradi04g08300.1 312 RYRGVRRRP-WGKFAAEIRDPKKNG--ARVWLGTYVTEEEAALAYDKAAFKMRG 362
                      7********.***********9998..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510328.68956126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-65678IPR001471AP2/ERF domain
CDDcd000184.35E-30165226No hitNo description
Gene3DG3DSA:3.30.730.104.3E-33165225IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-23166225IPR016177DNA-binding domain
PROSITE profilePS5103224.434166224IPR001471AP2/ERF domain
SMARTSM003801.6E-40166230IPR001471AP2/ERF domain
PfamPF008478.7E-15166216IPR001471AP2/ERF domain
PRINTSPR003673.3E-10167178IPR001471AP2/ERF domain
PRINTSPR003673.3E-10190206IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-22312371IPR016177DNA-binding domain
SMARTSM003806.6E-38312376IPR001471AP2/ERF domain
PfamPF008476.2E-14312362IPR001471AP2/ERF domain
PROSITE profilePS5103224.566312370IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-31312371IPR001471AP2/ERF domain
CDDcd000185.23E-23320372No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MDTYNSMNAT SEFDMTFSED YMVHDGLNDN NVLVWNEDWF SEKGDKAEEV VRRGTRYKGV  60
RRRAHGKFAA EIKDPNKKFT QSAKLAQNSN MTSATTDSDF EFLESVRQYL LGHDSVNLMP  120
ATHQVASHDP LSNPKRDDDL EDIVFRSEDA TAEVARHVHA PQAWKHYRGV RRRPWGKFAA  180
EIRDPKKNGT RVWLGTFDTE EKAALAYDKA AFKMRGQKAK LNFPHLIDSD NFETLSEPVM  240
ETTCKRKLSQ QSFEPSSPSS SCSEDSSESQ GTKRRKNLTH LLNKHDTCSN ASVDFSHPTE  300
AREVDAPPKW RRYRGVRRRP WGKFAAEIRD PKKNGARVWL GTYVTEEEAA LAYDKAAFKM  360
RGRKAKLNFP HLIDSDIRSQ AKVVEMALEA NVVQQWVNDF SDCTLIWCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-29165375268ATERF1
3gcc_A1e-29165375268ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014497463.11e-134PREDICTED: ethylene-responsive transcription factor 1-like
TrEMBLA0A0L9U3E31e-117A0A0L9U3E3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RSA31e-117A0A0S3RSA3_PHAAN; Uncharacterized protein
STRINGGLYMA09G37780.17e-92(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.15e-35ethylene-responsive element binding factor 13